InDesign version 16.1 macOS. Haven't tested Windows, could be same.
Steps to reproduce:
In a new document, create a box.
Create a second, smaller box, inside the first box.
Select both and create a compound path (Object menu, Paths, Create Compound Path).
Select the object.
Give it a large stroke, for example, 10 points.
Set align stroke to outside shape.
Result: smaller, inner box (the "hole") has the stoke going same direction as larger box, when it should be reversed, going "outward" (toward the hole) instead of into the shape.